IL_7TM3_156
3D structure
- PDB id
- 7TM3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.25 Å
Loop
- Sequence
- GAACGCG*CUAAGC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7TM3_156 not in the Motif Atlas
- Homologous match to IL_5TBW_373
- Geometric discrepancy: 0.1364
- The information below is about IL_5TBW_373
- Detailed Annotation
- Minor groove platform related
- Broad Annotation
- No text annotation
- Motif group
- IL_10207.3
- Basepair signature
- cWW-cWW-L-cSW-L-R-L-cWW-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
7TM3|1|u|G|21
7TM3|1|u|A|22
7TM3|1|u|A|23
7TM3|1|u|C|24
7TM3|1|u|G|25
7TM3|1|u|C|26
7TM3|1|u|G|27
*
7TM3|1|u|C|52
7TM3|1|u|U|53
7TM3|1|u|A|54
7TM3|1|u|A|55
7TM3|1|u|G|56
7TM3|1|u|C|57
Current chains
- Chain u
- 5S ribosomal RNA
Nearby chains
- Chain D
- Ribosomal_L18_c domain-containing protein
- Chain J
- 60S ribosomal protein L11
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