IL_7TM3_167

3D structure

PDB id

7TM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.25 Å

Loop

Sequence

UAUAGACAGCAGGAUG*CGCUAAGGAGUGUGUAACAACUCACCUGCCGAA

Length

49 nucleotides

Bulged bases

7TM3|1|K|A|1960, 7TM3|1|K|U|1971, 7TM3|1|K|A|2002

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7TM3|1|K|U|1957
7TM3|1|K|A|1958
7TM3|1|K|U|1959
7TM3|1|K|A|1960
7TM3|1|K|G|1961
7TM3|1|K|A|1962
7TM3|1|K|C|1963
7TM3|1|K|A|1964
7TM3|1|K|G|1965
7TM3|1|K|C|1966
7TM3|1|K|A|1967
7TM3|1|K|G|1968
7TM3|1|K|G|1969
7TM3|1|K|A|1970
7TM3|1|K|U|1971
7TM3|1|K|G|1972
*
7TM3|1|K|C|1994
7TM3|1|K|G|1995
7TM3|1|K|C|1996
7TM3|1|K|U|1997
7TM3|1|K|A|1998
7TM3|1|K|A|1999
7TM3|1|K|G|2000
7TM3|1|K|G|2001
7TM3|1|K|A|2002
7TM3|1|K|G|2003
7TM3|1|K|U|2004
7TM3|1|K|G|2005
7TM3|1|K|U|2006
7TM3|1|K|G|2007
7TM3|1|K|U|2008
7TM3|1|K|A|2009
7TM3|1|K|A|2010
7TM3|1|K|C|2011
7TM3|1|K|A|2012
7TM3|1|K|A|2013
7TM3|1|K|C|2014
7TM3|1|K|U|2015
7TM3|1|K|C|2016
7TM3|1|K|A|2017
7TM3|1|K|C|2018
7TM3|1|K|C|2019
7TM3|1|K|U|2020
7TM3|1|K|G|2021
7TM3|1|K|C|2022
7TM3|1|K|C|2023
7TM3|1|K|G|2024
7TM3|1|K|A|2025
7TM3|1|K|A|2026

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain m

eL40