IL_7TM3_168

3D structure

PDB id

7TM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.25 Å

Loop

Sequence

GGAAGUCGG*CUGUC

Length

14 nucleotides

Bulged bases

7TM3|1|K|G|3839

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TM3_168 not in the Motif Atlas

Homologous match to IL_8C3A_484

Geometric discrepancy: 0.0641

The information below is about IL_8C3A_484

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.2

Basepair signature

cWW-cWW-L-cWW-L-R-L-R-L-L

Number of instances in this motif group

3

Unit IDs

7TM3|1|K|G|2847
7TM3|1|K|G|2848
7TM3|1|K|A|2849
7TM3|1|K|A|2850
7TM3|1|K|G|2851
7TM3|1|K|U|2852
7TM3|1|K|C|2853
7TM3|1|K|G|2854
7TM3|1|K|G|2855
*
7TM3|1|K|C|3837
7TM3|1|K|U|3838
7TM3|1|K|G|3839
7TM3|1|K|U|3840
7TM3|1|K|C|3841

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain V

Ribosomal protein L23

Chain w

uL3