IL_7TOO_013

3D structure

PDB id

7TOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAC*GU

Length

5 nucleotides

Bulged bases

7TOO|1|A25S|A|338

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOO_013 not in the Motif Atlas

Homologous match to IL_8C3A_014

Geometric discrepancy: 0.1526

The information below is about IL_8C3A_014

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

7TOO|1|A25S|G|337
7TOO|1|A25S|A|338
7TOO|1|A25S|C|339
*
7TOO|1|A58S|G|25
7TOO|1|A58S|U|26

Current chains

Chain A25S

25S rRNA

Chain A58S

5.8S rRNA

Nearby chains

Chain AL04

RPL4A isoform 1

Chain AL26

60S ribosomal protein L26-A