IL_7TOO_029

3D structure

PDB id

7TOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GU*GGC

Length

5 nucleotides

Bulged bases

7TOO|1|A25S|G|860

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOO_029 not in the Motif Atlas

Geometric match to IL_7RQB_020

Geometric discrepancy: 0.1198

The information below is about IL_7RQB_020

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

42

Unit IDs

7TOO|1|A25S|G|833
7TOO|1|A25S|U|834
*
7TOO|1|A25S|G|859
7TOO|1|A25S|G|860
7TOO|1|A25S|C|861

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL02

60S ribosomal protein L2-A

Chain AL19

60S ribosomal protein L19-A

Chain AL43

60S ribosomal protein L43-A