IL_7TOO_032

3D structure

PDB id

7TOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

7TOO|1|A25S|U|874

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOO_032 not in the Motif Atlas

Homologous match to IL_8C3A_035

Geometric discrepancy: 0.1294

The information below is about IL_8C3A_035

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

7TOO|1|A25S|C|873
7TOO|1|A25S|U|874
7TOO|1|A25S|G|875
*
7TOO|1|A25S|C|886
7TOO|1|A25S|G|887

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AGR

ALS-FTD-associated dipeptide repeat protein, GR20

Chain AL03

RPL3 isoform 1

Chain AL37

60S ribosomal protein L37-A