3D structure

PDB id
7TOO (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
AA*UUU
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7TOO_039 not in the Motif Atlas
Homologous match to IL_8C3A_042
Geometric discrepancy: 0.1326
The information below is about IL_8C3A_042
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_18604.1
Basepair signature
cWW-tSH-L-R-tHH-tHS-cWW
Number of instances in this motif group
46

Unit IDs

7TOO|1|A25S|A|997
7TOO|1|A25S|A|998
*
7TOO|1|A25S|U|1050
7TOO|1|A25S|U|1051
7TOO|1|A25S|U|1052

Current chains

Chain A25S
25S rRNA

Nearby chains

Chain A5S
5S ribosomal RNA; 5S rRNA
Chain AL05
RPL5 isoform 1
Chain AL10
RPL10 isoform 1
Chain AL21
60S ribosomal protein L21-A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1458 s
Application loaded.