IL_7TOO_041

3D structure

PDB id

7TOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AUUA*UUCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOO_041 not in the Motif Atlas

Geometric match to IL_5TBW_041

Geometric discrepancy: 0.1159

The information below is about IL_5TBW_041

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

7TOO|1|A25S|A|1006
7TOO|1|A25S|U|1007
7TOO|1|A25S|U|1008
7TOO|1|A25S|A|1009
*
7TOO|1|A25S|U|1041
7TOO|1|A25S|U|1042
7TOO|1|A25S|C|1043
7TOO|1|A25S|U|1044

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL05

RPL5 isoform 1

Chain AL10

RPL10 isoform 1