IL_7TOO_054

3D structure

PDB id

7TOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

7TOO|1|A25S|G|1236

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOO_054 not in the Motif Atlas

Homologous match to IL_8C3A_058

Geometric discrepancy: 0.3415

The information below is about IL_8C3A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30542.5

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

7TOO|1|A25S|G|1234
7TOO|1|A25S|U|1235
7TOO|1|A25S|G|1236
7TOO|1|A25S|G|1237
7TOO|1|A25S|C|1238
*
7TOO|1|A25S|G|1250
7TOO|1|A25S|A|1251
7TOO|1|A25S|A|1252
7TOO|1|A25S|U|1253
7TOO|1|A25S|C|1254

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL12

Ribosomal protein L12