IL_7TOO_093

3D structure

PDB id

7TOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

7TOO|1|A25S|A|2808

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOO_093 not in the Motif Atlas

Homologous match to IL_8C3A_099

Geometric discrepancy: 0.1287

The information below is about IL_8C3A_099

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

7TOO|1|A25S|G|2412
7TOO|1|A25S|A|2413
*
7TOO|1|A25S|U|2807
7TOO|1|A25S|A|2808
7TOO|1|A25S|C|2809
7TOO|1|A25S|C|2810

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AGR

ALS-FTD-associated dipeptide repeat protein, GR20

Chain AL02

60S ribosomal protein L2-A