IL_7TOO_141

3D structure

PDB id

7TOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAAAGCA*UUAAGC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOO_141 not in the Motif Atlas

Homologous match to IL_5TBW_373

Geometric discrepancy: 0.0785

The information below is about IL_5TBW_373

Detailed Annotation

Minor groove platform related

Broad Annotation

No text annotation

Motif group

IL_10207.3

Basepair signature

cWW-cWW-L-cSW-L-R-L-cWW-R-cWW

Number of instances in this motif group

2

Unit IDs

7TOO|1|A5S|G|21
7TOO|1|A5S|A|22
7TOO|1|A5S|A|23
7TOO|1|A5S|A|24
7TOO|1|A5S|G|25
7TOO|1|A5S|C|26
7TOO|1|A5S|A|27
*
7TOO|1|A5S|U|53
7TOO|1|A5S|U|54
7TOO|1|A5S|A|55
7TOO|1|A5S|A|56
7TOO|1|A5S|G|57
7TOO|1|A5S|C|58

Current chains

Chain A5S

5S rRNA

Nearby chains

Chain AL05

RPL5 isoform 1

Chain AL11

RPL11A isoform 1