IL_7TOO_147

3D structure

PDB id

7TOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAA*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOO_147 not in the Motif Atlas

Homologous match to IL_8P9A_238

Geometric discrepancy: 0.1283

The information below is about IL_8P9A_238

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

7TOO|1|A25S|C|163
7TOO|1|A25S|A|164
7TOO|1|A25S|A|165
*
7TOO|1|A25S|U|257
7TOO|1|A25S|G|258

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL13

60S ribosomal protein L13-A

Chain AL35

60S ribosomal protein L35-A