IL_7TOO_153
3D structure
- PDB id
- 7TOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CAUA*UAAGCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7TOO_153 not in the Motif Atlas
- Homologous match to IL_8P9A_338
- Geometric discrepancy: 0.095
- The information below is about IL_8P9A_338
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_07469.3
- Basepair signature
- cWW-tSH-cWW-cSH-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
7TOO|1|A25S|C|2889
7TOO|1|A25S|A|2890
7TOO|1|A25S|U|2891
7TOO|1|A25S|A|2892
*
7TOO|1|A25S|U|2909
7TOO|1|A25S|A|2910
7TOO|1|A25S|A|2911
7TOO|1|A25S|G|2912
7TOO|1|A25S|C|2913
7TOO|1|A25S|G|2914
Current chains
- Chain A25S
- 25S rRNA
Nearby chains
- Chain AL03
- RPL3 isoform 1
- Chain AL09
- 60S ribosomal protein L9-A
- Chain AL16
- 60S ribosomal protein L16-A
- Chain AL23
- 60S ribosomal protein L23-A
- Chain AL40
- Ubiquitin-60S ribosomal protein L40
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