IL_7TOO_154

3D structure

PDB id

7TOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

ACAC*GCGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOO_154 not in the Motif Atlas

Geometric match to IL_5TBW_504

Geometric discrepancy: 0.2546

The information below is about IL_5TBW_504

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25872.2

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

6

Unit IDs

7TOO|1|A25S|A|3163
7TOO|1|A25S|C|3164
7TOO|1|A25S|A|3165
7TOO|1|A25S|C|3166
*
7TOO|1|A25S|G|3284
7TOO|1|A25S|C|3285
7TOO|1|A25S|G|3286
7TOO|1|A25S|U|3287

Current chains

Chain A25S

25S rRNA

Nearby chains