IL_7TOP_009

3D structure

PDB id

7TOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CAA*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOP_009 not in the Motif Atlas

Geometric match to IL_5TBW_009

Geometric discrepancy: 0.1571

The information below is about IL_5TBW_009

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_05035.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

38

Unit IDs

7TOP|1|A25S|C|163
7TOP|1|A25S|A|164
7TOP|1|A25S|A|165
*
7TOP|1|A25S|U|257
7TOP|1|A25S|G|258

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL13

60S ribosomal protein L13-A

Chain AL35

60S ribosomal protein L35-A