IL_7TOP_010

3D structure

PDB id

7TOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UG*UUUGUA

Length

8 nucleotides

Bulged bases

7TOP|1|A25S|U|252

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOP_010 not in the Motif Atlas

Homologous match to IL_8C3A_010

Geometric discrepancy: 0.5912

The information below is about IL_8C3A_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_33817.1

Basepair signature

cWW-R-L-L-L

Number of instances in this motif group

1

Unit IDs

7TOP|1|A25S|U|169
7TOP|1|A25S|G|170
*
7TOP|1|A25S|U|248
7TOP|1|A25S|U|249
7TOP|1|A25S|U|250
7TOP|1|A25S|G|251
7TOP|1|A25S|U|252
7TOP|1|A25S|A|253

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL08

60S ribosomal protein L8-A

Chain AL13

60S ribosomal protein L13-A

Chain AL35

60S ribosomal protein L35-A