3D structure

PDB id
7TOP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
GAC*GU
Length
5 nucleotides
Bulged bases
7TOP|1|A25S|A|338
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7TOP_013 not in the Motif Atlas
Homologous match to IL_8C3A_014
Geometric discrepancy: 0.127
The information below is about IL_8C3A_014
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_31462.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
127

Unit IDs

7TOP|1|A25S|G|337
7TOP|1|A25S|A|338
7TOP|1|A25S|C|339
*
7TOP|1|A58S|G|25
7TOP|1|A58S|U|26

Current chains

Chain A25S
25S rRNA
Chain A58S
5.8S rRNA

Nearby chains

Chain AL04
RPL4A isoform 1
Chain AL26
60S ribosomal protein L26-A

Coloring options:


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