IL_7TOP_014
3D structure
- PDB id
- 7TOP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- GAAC*GAGUGAAAAAGUAC
- Length
- 18 nucleotides
- Bulged bases
- 7TOP|1|A25S|A|398, 7TOP|1|A25S|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7TOP_014 not in the Motif Atlas
- Homologous match to IL_8C3A_015
- Geometric discrepancy: 0.1007
- The information below is about IL_8C3A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.7
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
7TOP|1|A25S|G|376
7TOP|1|A25S|A|377
7TOP|1|A25S|A|378
7TOP|1|A25S|C|379
*
7TOP|1|A25S|G|390
7TOP|1|A25S|A|391
7TOP|1|A25S|G|392
7TOP|1|A25S|U|393
7TOP|1|A25S|G|394
7TOP|1|A25S|A|395
7TOP|1|A25S|A|396
7TOP|1|A25S|A|397
7TOP|1|A25S|A|398
7TOP|1|A25S|A|399
7TOP|1|A25S|G|400
7TOP|1|A25S|U|401
7TOP|1|A25S|A|402
7TOP|1|A25S|C|403
Current chains
- Chain A25S
- 25S rRNA
Nearby chains
- Chain A58S
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AL17
- 60S ribosomal protein L17-A
- Chain AL26
- 60S ribosomal protein L26-A
- Chain AL39
- 60S ribosomal protein L39
Coloring options: