IL_7TOP_015
3D structure
- PDB id
- 7TOP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- GUGAAAU*ACGGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7TOP_015 not in the Motif Atlas
- Geometric match to IL_5TBW_015
- Geometric discrepancy: 0.0835
- The information below is about IL_5TBW_015
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.7
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
7TOP|1|A25S|G|404
7TOP|1|A25S|U|405
7TOP|1|A25S|G|406
7TOP|1|A25S|A|407
7TOP|1|A25S|A|408
7TOP|1|A25S|A|409
7TOP|1|A25S|U|410
*
7TOP|1|A58S|A|13
7TOP|1|A58S|C|14
7TOP|1|A58S|G|15
7TOP|1|A58S|G|16
7TOP|1|A58S|A|17
7TOP|1|A58S|U|18
7TOP|1|A58S|C|19
Current chains
- Chain A25S
- 25S rRNA
- Chain A58S
- 5.8S rRNA
Nearby chains
- Chain AL04
- RPL4A isoform 1
- Chain AL17
- 60S ribosomal protein L17-A
- Chain AL32
- RPL32 isoform 1
Coloring options: