IL_7TOP_019
3D structure
- PDB id
- 7TOP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- GGAUAAAUC*GGAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 7TOP|1|A25S|A|519, 7TOP|1|A25S|U|520
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7TOP_019 not in the Motif Atlas
- Geometric match to IL_5TBW_019
- Geometric discrepancy: 0.1059
- The information below is about IL_5TBW_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74024.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
7TOP|1|A25S|G|517
7TOP|1|A25S|G|518
7TOP|1|A25S|A|519
7TOP|1|A25S|U|520
7TOP|1|A25S|A|521
7TOP|1|A25S|A|522
7TOP|1|A25S|A|523
7TOP|1|A25S|U|524
7TOP|1|A25S|C|525
*
7TOP|1|A25S|G|567
7TOP|1|A25S|G|568
7TOP|1|A25S|A|569
7TOP|1|A25S|A|570
7TOP|1|A25S|U|571
7TOP|1|A25S|A|572
7TOP|1|A25S|C|573
Current chains
- Chain A25S
- 25S rRNA
Nearby chains
- Chain AL04
- RPL4A isoform 1
- Chain AL07
- 60S ribosomal protein L7-A
- Chain AL14
- 60S ribosomal protein L14-A
- Chain AL20
- 60S ribosomal protein L20-A
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