3D structure

PDB id
7TOP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
CC*GAG
Length
5 nucleotides
Bulged bases
7TOP|1|A25S|A|780
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7TOP_024 not in the Motif Atlas
Homologous match to IL_8C3A_026
Geometric discrepancy: 0.1023
The information below is about IL_8C3A_026
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_31462.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
127

Unit IDs

7TOP|1|A25S|C|752
7TOP|1|A25S|C|753
*
7TOP|1|A25S|G|779
7TOP|1|A25S|A|780
7TOP|1|A25S|G|781

Current chains

Chain A25S
25S rRNA

Nearby chains

Chain AL18
60S ribosomal protein L18-A
Chain AL28
60S ribosomal protein L28
Chain AL29
RPL29 isoform 1

Coloring options:


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