IL_7TOP_026

3D structure

PDB id

7TOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOP_026 not in the Motif Atlas

Homologous match to IL_8C3A_028

Geometric discrepancy: 0.1502

The information below is about IL_8C3A_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7TOP|1|A25S|C|758
7TOP|1|A25S|U|759
7TOP|1|A25S|G|760
7TOP|1|A25S|A|761
7TOP|1|A25S|U|762
7TOP|1|A25S|G|763
*
7TOP|1|A25S|C|768
7TOP|1|A25S|G|769
7TOP|1|A25S|G|770
7TOP|1|A25S|A|771
7TOP|1|A25S|U|772
7TOP|1|A25S|G|773

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL13

60S ribosomal protein L13-A

Chain AL28

60S ribosomal protein L28

Chain AL42

60S ribosomal protein L42-A