IL_7TOP_029

3D structure

PDB id

7TOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GU*GGC

Length

5 nucleotides

Bulged bases

7TOP|1|A25S|G|860

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOP_029 not in the Motif Atlas

Homologous match to IL_8C3A_032

Geometric discrepancy: 0.104

The information below is about IL_8C3A_032

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

7TOP|1|A25S|G|833
7TOP|1|A25S|U|834
*
7TOP|1|A25S|G|859
7TOP|1|A25S|G|860
7TOP|1|A25S|C|861

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL02

60S ribosomal protein L2-A

Chain AL19

60S ribosomal protein L19-A

Chain AL43

60S ribosomal protein L43-A