IL_7TOP_030

3D structure

PDB id

7TOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOP_030 not in the Motif Atlas

Geometric match to IL_4WF9_024

Geometric discrepancy: 0.0916

The information below is about IL_4WF9_024

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

7TOP|1|A25S|U|834
7TOP|1|A25S|G|835
7TOP|1|A25S|A|836
7TOP|1|A25S|A|837
7TOP|1|A25S|G|838
*
7TOP|1|A25S|U|855
7TOP|1|A25S|G|856
7TOP|1|A25S|G|857
7TOP|1|A25S|A|858
7TOP|1|A25S|G|859

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL02

60S ribosomal protein L2-A

Chain AL19

60S ribosomal protein L19-A

Chain AL43

60S ribosomal protein L43-A