IL_7TOP_042

3D structure

PDB id

7TOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AGA*UAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOP_042 not in the Motif Atlas

Homologous match to IL_8C3A_045

Geometric discrepancy: 0.1203

The information below is about IL_8C3A_045

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7TOP|1|A25S|A|1009
7TOP|1|A25S|G|1010
7TOP|1|A25S|A|1011
*
7TOP|1|A25S|U|1039
7TOP|1|A25S|A|1040
7TOP|1|A25S|U|1041

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL05

RPL5 isoform 1

Chain AL10

RPL10 isoform 1