IL_7TOP_050
3D structure
- PDB id
- 7TOP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- AUA*UU
- Length
- 5 nucleotides
- Bulged bases
- 7TOP|1|A25S|U|1181
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7TOP_050 not in the Motif Atlas
- Geometric match to IL_5TBW_050
- Geometric discrepancy: 0.1115
- The information below is about IL_5TBW_050
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_83039.19
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 123
Unit IDs
7TOP|1|A25S|A|1180
7TOP|1|A25S|U|1181
7TOP|1|A25S|A|1182
*
7TOP|1|A25S|U|1324
7TOP|1|A25S|U|1325
Current chains
- Chain A25S
- 25S rRNA
Nearby chains
- Chain AL07
- 60S ribosomal protein L7-A
- Chain AL14
- 60S ribosomal protein L14-A
- Chain AL16
- 60S ribosomal protein L16-A
- Chain AL20
- 60S ribosomal protein L20-A
- Chain AL33
- 60S ribosomal protein L33-A
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