IL_7TOP_053

3D structure

PDB id

7TOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

7TOP|1|A25S|U|1208

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOP_053 not in the Motif Atlas

Homologous match to IL_8C3A_056

Geometric discrepancy: 0.4893

The information below is about IL_8C3A_056

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

7TOP|1|A25S|G|1207
7TOP|1|A25S|U|1208
7TOP|1|A25S|G|1209
*
7TOP|1|A25S|C|1296
7TOP|1|A25S|C|1297

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain A5S

5S ribosomal RNA; 5S rRNA

Chain AL09

60S ribosomal protein L9-A

Chain AL20

60S ribosomal protein L20-A

Chain AL40

Ubiquitin-60S ribosomal protein L40