IL_7TOP_065

3D structure

PDB id

7TOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGAUU*AGUUUUC

Length

12 nucleotides

Bulged bases

7TOP|1|A25S|U|1820, 7TOP|1|A25S|U|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7TOP|1|A25S|G|1623
7TOP|1|A25S|G|1624
7TOP|1|A25S|A|1625
7TOP|1|A25S|U|1626
7TOP|1|A25S|U|1627
*
7TOP|1|A25S|A|1816
7TOP|1|A25S|G|1817
7TOP|1|A25S|U|1818
7TOP|1|A25S|U|1819
7TOP|1|A25S|U|1820
7TOP|1|A25S|U|1821
7TOP|1|A25S|C|1822

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL27

60S ribosomal protein L27-A

Chain AL34

60S ribosomal protein L34-A