IL_7TOP_085

3D structure

PDB id

7TOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

7TOP|1|A25S|U|2205

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOP_085 not in the Motif Atlas

Geometric match to IL_5TBW_086

Geometric discrepancy: 0.2436

The information below is about IL_5TBW_086

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

7TOP|1|A25S|C|2204
7TOP|1|A25S|U|2205
7TOP|1|A25S|G|2206
*
7TOP|1|A25S|C|2237
7TOP|1|A25S|G|2238

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL02

60S ribosomal protein L2-A

Chain APTN

Transfer RNA; tRNA