IL_7TOP_088

3D structure

PDB id

7TOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GC*GCAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOP_088 not in the Motif Atlas

Geometric match to IL_5TBW_089

Geometric discrepancy: 0.0864

The information below is about IL_5TBW_089

Detailed Annotation

Bulged stacked bases

Broad Annotation

Bulged stacked bases

Motif group

IL_22551.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

9

Unit IDs

7TOP|1|A25S|G|2276
7TOP|1|A25S|C|2277
*
7TOP|1|A25S|G|2307
7TOP|1|A25S|C|2308
7TOP|1|A25S|A|2309
7TOP|1|A25S|U|2310

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL41

60S ribosomal protein L41-A