IL_7TOP_091

3D structure

PDB id

7TOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GAA*UACC

Length

7 nucleotides

Bulged bases

7TOP|1|A25S|A|2397, 7TOP|1|A25S|C|2983

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOP_091 not in the Motif Atlas

Homologous match to IL_8C3A_097

Geometric discrepancy: 0.0947

The information below is about IL_8C3A_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54678.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7TOP|1|A25S|G|2396
7TOP|1|A25S|A|2397
7TOP|1|A25S|A|2398
*
7TOP|1|A25S|U|2981
7TOP|1|A25S|A|2982
7TOP|1|A25S|C|2983
7TOP|1|A25S|C|2984

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL03

RPL3 isoform 1

Chain AL17

60S ribosomal protein L17-A

Chain PR

PR20