IL_7TOP_092

3D structure

PDB id

7TOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUU*AC

Length

5 nucleotides

Bulged bases

7TOP|1|A25S|U|2410

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOP_092 not in the Motif Atlas

Homologous match to IL_8C3A_098

Geometric discrepancy: 0.0877

The information below is about IL_8C3A_098

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

7TOP|1|A25S|G|2409
7TOP|1|A25S|U|2410
7TOP|1|A25S|U|2411
*
7TOP|1|A25S|A|2811
7TOP|1|A25S|C|2812

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL04

RPL4A isoform 1

Chain AL28

60S ribosomal protein L28

Chain PR

PR20