IL_7TOP_094
3D structure
- PDB id
- 7TOP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- UAG*UGGG
- Length
- 7 nucleotides
- Bulged bases
- 7TOP|1|A25S|G|2606
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7TOP_094 not in the Motif Atlas
- Homologous match to IL_8C3A_100
- Geometric discrepancy: 0.0865
- The information below is about IL_8C3A_100
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_38958.10
- Basepair signature
- cWW-cWW-cWW-tHS
- Number of instances in this motif group
- 9
Unit IDs
7TOP|1|A25S|U|2423
7TOP|1|A25S|A|2424
7TOP|1|A25S|G|2425
*
7TOP|1|A25S|U|2604
7TOP|1|A25S|G|2605
7TOP|1|A25S|G|2606
7TOP|1|A25S|G|2607
Current chains
- Chain A25S
- 25S rRNA
Nearby chains
- Chain AL02
- 60S ribosomal protein L2-A
- Chain AL15
- 60S ribosomal protein L15-A
- Chain AL42
- 60S ribosomal protein L42-A
- Chain APTN
- Transfer RNA; tRNA
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