IL_7TOP_104

3D structure

PDB id

7TOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UCAAG*CGACA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOP_104 not in the Motif Atlas

Homologous match to IL_8C3A_114

Geometric discrepancy: 0.0949

The information below is about IL_8C3A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

7TOP|1|A25S|U|2835
7TOP|1|A25S|C|2836
7TOP|1|A25S|A|2837
7TOP|1|A25S|A|2838
7TOP|1|A25S|G|2839
*
7TOP|1|A25S|C|2849
7TOP|1|A25S|G|2850
7TOP|1|A25S|A|2851
7TOP|1|A25S|C|2852
7TOP|1|A25S|A|2853

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL10

RPL10 isoform 1

Chain AL40

Ubiquitin-60S ribosomal protein L40