IL_7TOP_120
3D structure
- PDB id
- 7TOP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- AUA*UUU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7TOP_120 not in the Motif Atlas
- Geometric match to IL_5B2P_001
- Geometric discrepancy: 0.163
- The information below is about IL_5B2P_001
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_28037.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 65
Unit IDs
7TOP|1|A25S|A|3168
7TOP|1|A25S|U|3169
7TOP|1|A25S|A|3170
*
7TOP|1|A25S|U|3280
7TOP|1|A25S|U|3281
7TOP|1|A25S|U|3282
Current chains
- Chain A25S
- 25S rRNA
Nearby chains
- Chain AL33
- 60S ribosomal protein L33-A
Coloring options: