IL_7TOP_149

3D structure

PDB id

7TOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGAAGUCGG*CUGUC

Length

14 nucleotides

Bulged bases

7TOP|1|A25S|G|2335

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOP_149 not in the Motif Atlas

Homologous match to IL_8C3A_484

Geometric discrepancy: 0.0717

The information below is about IL_8C3A_484

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.2

Basepair signature

cWW-cWW-L-cWW-L-R-L-R-L-L

Number of instances in this motif group

3

Unit IDs

7TOP|1|A25S|G|1898
7TOP|1|A25S|G|1899
7TOP|1|A25S|A|1900
7TOP|1|A25S|A|1901
7TOP|1|A25S|G|1902
7TOP|1|A25S|U|1903
7TOP|1|A25S|C|1904
7TOP|1|A25S|G|1905
7TOP|1|A25S|G|1906
*
7TOP|1|A25S|C|2333
7TOP|1|A25S|U|2334
7TOP|1|A25S|G|2335
7TOP|1|A25S|U|2336
7TOP|1|A25S|C|2337

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL03

RPL3 isoform 1

Chain AL23

60S ribosomal protein L23-A