IL_7TOR_009

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAUGGU*AACG

Length

10 nucleotides

Bulged bases

7TOR|1|A18S|G|113

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOR_009 not in the Motif Atlas

Geometric match to IL_1MFQ_004

Geometric discrepancy: 0.2991

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

7TOR|1|A18S|U|110
7TOR|1|A18S|A|111
7TOR|1|A18S|U|112
7TOR|1|A18S|G|113
7TOR|1|A18S|G|114
7TOR|1|A18S|U|115
*
7TOR|1|A18S|A|348
7TOR|1|A18S|A|349
7TOR|1|A18S|C|350
7TOR|1|A18S|G|351

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS04

40S ribosomal protein S4

Chain AS08

40S ribosomal protein S8

Chain AS11

40S ribosomal protein S11