IL_7TOR_014

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGAC*GGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOR_014 not in the Motif Atlas

Geometric match to IL_5J7L_338

Geometric discrepancy: 0.2682

The information below is about IL_5J7L_338

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

7TOR|1|A18S|C|188
7TOR|1|A18S|U|189
7TOR|1|A18S|G|190
7TOR|1|A18S|A|191
7TOR|1|A18S|C|192
*
7TOR|1|A18S|G|207
7TOR|1|A18S|G|208
7TOR|1|A18S|A|209
7TOR|1|A18S|U|210
7TOR|1|A18S|G|211

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS08

40S ribosomal protein S8