IL_7TOR_043

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOR_043 not in the Motif Atlas

Geometric match to IL_4V88_417

Geometric discrepancy: 0.1071

The information below is about IL_4V88_417

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7TOR|1|A18S|G|874
7TOR|1|A18S|A|875
7TOR|1|A18S|C|876
*
7TOR|1|A18S|G|910
7TOR|1|A18S|C|911
7TOR|1|A18S|C|912

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AL19

60S ribosomal protein L19

Chain AS07

eS7

Chain AS11

40S ribosomal protein S11