IL_7TOR_046

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAC*GUUUU

Length

9 nucleotides

Bulged bases

7TOR|1|A18S|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOR_046 not in the Motif Atlas

Geometric match to IL_4V88_429

Geometric discrepancy: 0.1371

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

7TOR|1|A18S|G|924
7TOR|1|A18S|G|925
7TOR|1|A18S|A|926
7TOR|1|A18S|C|927
*
7TOR|1|A18S|G|1014
7TOR|1|A18S|U|1015
7TOR|1|A18S|U|1016
7TOR|1|A18S|U|1017
7TOR|1|A18S|U|1018

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS13

40S ribosomal protein S13

Chain AS27

40S ribosomal protein S27