IL_7TOR_058

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

7TOR|1|A18S|A|1695

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOR_058 not in the Motif Atlas

Geometric match to IL_5J7L_039

Geometric discrepancy: 0.1125

The information below is about IL_5J7L_039

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

7TOR|1|A18S|G|1203
7TOR|1|A18S|A|1204
*
7TOR|1|A18S|U|1694
7TOR|1|A18S|A|1695
7TOR|1|A18S|C|1696

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS02

40S ribosomal protein S2

Chain AS26

eS26