IL_7TOR_061
3D structure
- PDB id
- 7TOR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CCU*GCG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7TOR_061 not in the Motif Atlas
- Geometric match to IL_4V88_444
- Geometric discrepancy: 0.1395
- The information below is about IL_4V88_444
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
7TOR|1|A18S|C|1230
7TOR|1|A18S|C|1231
7TOR|1|A18S|U|1232
*
7TOR|1|A18S|G|1526
7TOR|1|A18S|C|1527
7TOR|1|A18S|G|1528
Current chains
- Chain A18S
- 18S rRNA
Nearby chains
- Chain AS16
- uS9
- Chain AS18
- 40S ribosomal protein S18
- Chain AS19
- eS19
- Chain AS20
- 40S ribosomal protein S20
- Chain PTRN
- Transfer RNA; tRNA
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