3D structure

PDB id
7TOR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
CCU*ACG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7TOR_089 not in the Motif Atlas
Geometric match to IL_3SZX_002
Geometric discrepancy: 0.1028
The information below is about IL_3SZX_002
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

7TOR|1|A18S|C|1739
7TOR|1|A18S|C|1740
7TOR|1|A18S|U|1741
*
7TOR|1|A18S|A|1793
7TOR|1|A18S|C|1794
7TOR|1|A18S|G|1795

Current chains

Chain A18S
18S rRNA

Nearby chains

Chain A28S
Large subunit ribosomal RNA; LSU rRNA
Chain AL24
Ribosomal protein L24
Chain AS06
40S ribosomal protein S6
Chain AS08
40S ribosomal protein S8
Chain GR2
GR20, ALS/FTD dipeptide repeat protein

Coloring options:


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