IL_7TOR_099

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAA*UG

Length

6 nucleotides

Bulged bases

7TOR|1|A28S|G|119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOR_099 not in the Motif Atlas

Geometric match to IL_1U9S_003

Geometric discrepancy: 0.223

The information below is about IL_1U9S_003

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

7TOR|1|A28S|C|118
7TOR|1|A28S|G|119
7TOR|1|A28S|A|120
7TOR|1|A28S|A|121
*
7TOR|1|A28S|U|152
7TOR|1|A28S|G|153

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL08

eL8

Chain AL15

60S ribosomal protein L15

Chain AL35

60S ribosomal protein L35