IL_7TOR_109
3D structure
- PDB id
- 7TOR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUGAAAC*GUGGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7TOR_109 not in the Motif Atlas
- Homologous match to IL_8C3A_016
- Geometric discrepancy: 0.1066
- The information below is about IL_8C3A_016
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.7
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
7TOR|1|A28S|G|415
7TOR|1|A28S|U|416
7TOR|1|A28S|G|417
7TOR|1|A28S|A|418
7TOR|1|A28S|A|419
7TOR|1|A28S|A|420
7TOR|1|A28S|C|421
*
7TOR|1|A58S|G|13
7TOR|1|A58S|U|14
7TOR|1|A58S|G|15
7TOR|1|A58S|G|16
7TOR|1|A58S|A|17
7TOR|1|A58S|U|18
7TOR|1|A58S|C|19
Current chains
- Chain A28S
- 28S rRNA
- Chain A58S
- 5.8S rRNA
Nearby chains
- Chain AL04
- 60S ribosomal protein L4
- Chain AL17
- 60S ribosomal protein L17
- Chain AL32
- 60S ribosomal protein L32
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