3D structure

PDB id
7TOR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
GUGAAAC*GUGGAUC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7TOR_109 not in the Motif Atlas
Homologous match to IL_8C3A_016
Geometric discrepancy: 0.1066
The information below is about IL_8C3A_016
Detailed Annotation
Triple sheared with non-canonical cWW
Broad Annotation
Triple sheared
Motif group
IL_66414.7
Basepair signature
cWW-L-R-tSH-tSH-tHS-cWW-cWW
Number of instances in this motif group
7

Unit IDs

7TOR|1|A28S|G|415
7TOR|1|A28S|U|416
7TOR|1|A28S|G|417
7TOR|1|A28S|A|418
7TOR|1|A28S|A|419
7TOR|1|A28S|A|420
7TOR|1|A28S|C|421
*
7TOR|1|A58S|G|13
7TOR|1|A58S|U|14
7TOR|1|A58S|G|15
7TOR|1|A58S|G|16
7TOR|1|A58S|A|17
7TOR|1|A58S|U|18
7TOR|1|A58S|C|19

Current chains

Chain A28S
28S rRNA
Chain A58S
5.8S rRNA

Nearby chains

Chain AL04
60S ribosomal protein L4
Chain AL17
60S ribosomal protein L17
Chain AL32
60S ribosomal protein L32

Coloring options:


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