IL_7TOR_116

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUC*GC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOR_116 not in the Motif Atlas

Geometric match to IL_6JXM_001

Geometric discrepancy: 0.2546

The information below is about IL_6JXM_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_84476.1

Basepair signature

cWW-cWW

Number of instances in this motif group

13

Unit IDs

7TOR|1|A28S|G|482
7TOR|1|A28S|G|483
7TOR|1|A28S|U|484
7TOR|1|A28S|C|485
*
7TOR|1|A28S|G|671
7TOR|1|A28S|C|672

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain ALNW

60S ribosomal protein L28