IL_7TOR_124

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AC*GAAU

Length

6 nucleotides

Bulged bases

7TOR|1|A28S|A|943, 7TOR|1|A28S|A|944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOR_124 not in the Motif Atlas

Geometric match to IL_7V9E_001

Geometric discrepancy: 0.2834

The information below is about IL_7V9E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.2

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

7TOR|1|A28S|A|723
7TOR|1|A28S|C|724
*
7TOR|1|A28S|G|942
7TOR|1|A28S|A|943
7TOR|1|A28S|A|944
7TOR|1|A28S|U|945

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL04

60S ribosomal protein L4

Chain AL07

60S ribosomal protein L7