IL_7TOR_127

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCCG*CCCG

Length

8 nucleotides

Bulged bases

7TOR|1|A28S|C|738, 7TOR|1|A28S|C|738|||A, 7TOR|1|A28S|C|924, 7TOR|1|A28S|C|925

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOR_127 not in the Motif Atlas

Geometric match to IL_5J7L_341

Geometric discrepancy: 0.2128

The information below is about IL_5J7L_341

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

7TOR|1|A28S|C|737
7TOR|1|A28S|C|738
7TOR|1|A28S|C|738|||A
7TOR|1|A28S|G|739
*
7TOR|1|A28S|C|923
7TOR|1|A28S|C|924
7TOR|1|A28S|C|925
7TOR|1|A28S|G|926

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL14

60S ribosomal protein L14