IL_7TOR_130

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUC*GCCCG

Length

8 nucleotides

Bulged bases

7TOR|1|A28S|C|1214, 7TOR|1|A28S|C|1215

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOR_130 not in the Motif Atlas

Geometric match to IL_7A0S_030

Geometric discrepancy: 0.3295

The information below is about IL_7A0S_030

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_42997.3

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

20

Unit IDs

7TOR|1|A28S|C|1082
7TOR|1|A28S|U|1083
7TOR|1|A28S|C|1084
*
7TOR|1|A28S|G|1213
7TOR|1|A28S|C|1214
7TOR|1|A28S|C|1215
7TOR|1|A28S|C|1216
7TOR|1|A28S|G|1217

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL07

60S ribosomal protein L7

Chain AL29

eL29