IL_7TOR_136

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GG*CGCC

Length

6 nucleotides

Bulged bases

7TOR|1|A28S|C|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOR_136 not in the Motif Atlas

Geometric match to IL_7V9E_001

Geometric discrepancy: 0.2705

The information below is about IL_7V9E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.2

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

7TOR|1|A28S|G|1360
7TOR|1|A28S|G|1361
*
7TOR|1|A28S|C|1376
7TOR|1|A28S|G|1377
7TOR|1|A28S|C|1378
7TOR|1|A28S|C|1379

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL04

60S ribosomal protein L4

Chain AL13

60S ribosomal protein L13

Chain AL15

60S ribosomal protein L15